HL_6OLI_077

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6OLI|1|t|G|2400, 6OLI|1|t|U|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_077 not in the Motif Atlas

Geometric match to HL_5TBW_032

Geometric discrepancy: 0.2023

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6OLI|1|t|A|2399
6OLI|1|t|G|2400
6OLI|1|t|C|2401
6OLI|1|t|A|2402
6OLI|1|t|G|2403
6OLI|1|t|U|2404
6OLI|1|t|U|2405

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L17

Chain S

60S ribosomal protein L19

Chain m

60S ribosomal protein L39