HL_6OLI_115

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6OLI|1|t|A|4868, 6OLI|1|t|A|4869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_115 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1276

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLI|1|t|G|4865
6OLI|1|t|G|4866
6OLI|1|t|A|4867
6OLI|1|t|A|4868
6OLI|1|t|A|4869
6OLI|1|t|G|4870
6OLI|1|t|G|4871
6OLI|1|t|C|4872

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a