HL_6OLI_116

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6OLI|1|t|U|4934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_116 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1318

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6OLI|1|t|G|4933
6OLI|1|t|U|4934
6OLI|1|t|A|4935
6OLI|1|t|G|4936
6OLI|1|t|A|4937
6OLI|1|t|C|4938
6OLI|1|t|G|4939
6OLI|1|t|A|4940
6OLI|1|t|C|4941

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17