HL_6OLI_117

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6OLI|1|t|C|4981, 6OLI|1|t|U|4984, 6OLI|1|t|C|4985

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_117 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.5993

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6OLI|1|t|C|4979
6OLI|1|t|U|4980
6OLI|1|t|C|4981
6OLI|1|t|C|4982
6OLI|1|t|C|4983
6OLI|1|t|U|4984
6OLI|1|t|C|4985
6OLI|1|t|G|4986

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8