HL_6OLI_119
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUCCGUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLI_119 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1553
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
6OLI|1|u|A|31
6OLI|1|u|U|32
6OLI|1|u|U|33
6OLI|1|u|C|34
6OLI|1|u|C|35
6OLI|1|u|G|36
6OLI|1|u|U|37
6OLI|1|u|A|38
6OLI|1|u|U|39
Current chains
- Chain u
- tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- mRNA
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