HL_6OLI_125

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG(PSU)(PSU)CAAAGC

Length

11 nucleotides

Bulged bases

6OLI|1|S2|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|S2|G|819
6OLI|1|S2|U|820
6OLI|1|S2|G|821
6OLI|1|S2|PSU|822
6OLI|1|S2|PSU|823
6OLI|1|S2|C|824
6OLI|1|S2|A|825
6OLI|1|S2|A|826
6OLI|1|S2|A|827
6OLI|1|S2|G|828
6OLI|1|S2|C|829

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24