3D structure

PDB id
6OLZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGCGUCGAGAGUGGACGGGAGCGGCGGCCCGCCCGCGGACGCUACGC
Length
47 nucleotides
Bulged bases
6OLZ|1|A2|U|2077, 6OLZ|1|A2|C|2229, 6OLZ|1|A2|U|2246, 6OLZ|1|A2|C|2248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OLZ|1|A2|G|2066
6OLZ|1|A2|G|2067
6OLZ|1|A2|C|2068
6OLZ|1|A2|G|2069
6OLZ|1|A2|U|2070
6OLZ|1|A2|C|2071
6OLZ|1|A2|G|2072
6OLZ|1|A2|A|2073
6OLZ|1|A2|G|2074
6OLZ|1|A2|A|2075
6OLZ|1|A2|G|2076
6OLZ|1|A2|U|2077
6OLZ|1|A2|G|2078
6OLZ|1|A2|G|2079
6OLZ|1|A2|A|2080
6OLZ|1|A2|C|2081
6OLZ|1|A2|G|2082
6OLZ|1|A2|G|2083
6OLZ|1|A2|G|2084
6OLZ|1|A2|A|2085
6OLZ|1|A2|G|2086
6OLZ|1|A2|C|2087
6OLZ|1|A2|G|2088
6OLZ|1|A2|G|2089
6OLZ|1|A2|C|2090
6OLZ|1|A2|G|2091
6OLZ|1|A2|G|2092
6OLZ|1|A2|C|2093
6OLZ|1|A2|C|2228
6OLZ|1|A2|C|2229
6OLZ|1|A2|G|2231
6OLZ|1|A2|C|2235
6OLZ|1|A2|C|2236
6OLZ|1|A2|C|2237
6OLZ|1|A2|G|2238
6OLZ|1|A2|C|2239
6OLZ|1|A2|G|2240
6OLZ|1|A2|G|2241
6OLZ|1|A2|A|2242
6OLZ|1|A2|C|2243
6OLZ|1|A2|G|2244
6OLZ|1|A2|C|2245
6OLZ|1|A2|U|2246
6OLZ|1|A2|A|2247
6OLZ|1|A2|C|2248
6OLZ|1|A2|G|2249
6OLZ|1|A2|C|2250

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AC
60S ribosomal protein L4
Chain AE
60S ribosomal protein L6
Chain AF
60S ribosomal protein L7
Chain AQ
60S ribosomal protein L18
Chain Ab
60S ribosomal protein L29
Chain Ae
60S ribosomal protein L32
Chain At
60S ribosomal protein L28

Coloring options:

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