HL_6OLZ_061

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_061 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1917

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6OLZ|1|A2|C|4232
6OLZ|1|A2|A|4233
6OLZ|1|A2|G|4234
6OLZ|1|A2|A|4235
6OLZ|1|A2|A|4236
6OLZ|1|A2|G|4237
6OLZ|1|A2|G|4238
6OLZ|1|A2|G|4239

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21

Chain Bv

Transfer RNA; tRNA