HL_6OLZ_104

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAUUCCCAUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_104 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2612

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OLZ|1|B1|U|1111
6OLZ|1|B1|U|1112
6OLZ|1|B1|A|1113
6OLZ|1|B1|U|1114
6OLZ|1|B1|U|1115
6OLZ|1|B1|C|1116
6OLZ|1|B1|C|1117
6OLZ|1|B1|C|1118
6OLZ|1|B1|A|1119
6OLZ|1|B1|U|1120
6OLZ|1|B1|G|1121
6OLZ|1|B1|A|1122

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain BR

40S ribosomal protein S17

Chain Bb

40S ribosomal protein S27