HL_6OLZ_120

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_120 not in the Motif Atlas

Homologous match to HL_5WWT_002

Geometric discrepancy: 0.2112

The information below is about HL_5WWT_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6OLZ|1|Bv|G|53
6OLZ|1|Bv|U|54
6OLZ|1|Bv|U|55
6OLZ|1|Bv|C|56
6OLZ|1|Bv|G|57
6OLZ|1|Bv|A|58
6OLZ|1|Bv|U|59
6OLZ|1|Bv|U|60
6OLZ|1|Bv|C|61

Current chains

Chain Bv

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

60S ribosomal protein L11

Chain Ao

60S ribosomal protein L36a