HL_6OLZ_126

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6OLZ|1|A2|G|1803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_126 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.5311

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6OLZ|1|A2|C|1798
6OLZ|1|A2|U|1799
6OLZ|1|A2|G|1800
6OLZ|1|A2|G|1801
6OLZ|1|A2|C|1802
6OLZ|1|A2|G|1803
6OLZ|1|A2|U|1804
6OLZ|1|A2|G|1805

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29