HL_6OLZ_135

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGACCCGG

Length

9 nucleotides

Bulged bases

6OLZ|1|B1|A|500, 6OLZ|1|B1|C|502, 6OLZ|1|B1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_135 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.369

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OLZ|1|B1|C|497
6OLZ|1|B1|C|498
6OLZ|1|B1|G|499
6OLZ|1|B1|A|500
6OLZ|1|B1|C|501
6OLZ|1|B1|C|502
6OLZ|1|B1|C|503
6OLZ|1|B1|G|504
6OLZ|1|B1|G|505

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BY

40S ribosomal protein S24