HL_6OLZ_143

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6OLZ|1|A2|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_143 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.1664

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6OLZ|1|A2|U|1300
6OLZ|1|A2|C|1301
6OLZ|1|A2|U|1302
6OLZ|1|A2|U|1303
6OLZ|1|A2|G|1304
6OLZ|1|A2|A|1305
6OLZ|1|A2|A|1306
6OLZ|1|A2|A|1307
6OLZ|1|A2|C|1308
6OLZ|1|A2|A|1309

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Aa

60S ribosomal protein L27a

Chain Ae

60S ribosomal protein L32