HL_6OLZ_147

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6OLZ|1|B1|U|1300, 6OLZ|1|B1|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_147 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.278

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6OLZ|1|B1|A|1295
6OLZ|1|B1|U|1296
6OLZ|1|B1|U|1297
6OLZ|1|B1|G|1298
6OLZ|1|B1|A|1299
6OLZ|1|B1|U|1300
6OLZ|1|B1|A|1301
6OLZ|1|B1|G|1302
6OLZ|1|B1|C|1303
6OLZ|1|B1|U|1304

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a