HL_6OM0_018

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACUCUUUCGAGGCC

Length

16 nucleotides

Bulged bases

6OM0|1|S2|A|536, 6OM0|1|S2|U|540, 6OM0|1|S2|U|542, 6OM0|1|S2|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM0_018 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2559

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OM0|1|S2|G|534
6OM0|1|S2|G|535
6OM0|1|S2|A|536
6OM0|1|S2|C|537
6OM0|1|S2|U|538
6OM0|1|S2|C|539
6OM0|1|S2|U|540
6OM0|1|S2|U|541
6OM0|1|S2|U|542
6OM0|1|S2|C|543
6OM0|1|S2|G|544
6OM0|1|S2|A|545
6OM0|1|S2|G|546
6OM0|1|S2|G|547
6OM0|1|S2|C|548
6OM0|1|S2|C|549

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30