HL_6OM0_040

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGGAGCGC

Length

11 nucleotides

Bulged bases

6OM0|1|S2|A|1781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM0_040 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1384

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OM0|1|S2|G|1749
6OM0|1|S2|C|1750
6OM0|1|S2|C|1751
6OM0|1|S2|C|1752
6OM0|1|S2|G|1779
6OM0|1|S2|G|1780
6OM0|1|S2|A|1781
6OM0|1|S2|G|1782
6OM0|1|S2|C|1783
6OM0|1|S2|G|1784
6OM0|1|S2|C|1785

Current chains

Chain S2

18S ribosomal RNA

Nearby chains