HL_6OM6_015

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGCGAG

Length

8 nucleotides

Bulged bases

6OM6|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_015 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3179

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6OM6|1|1|C|486
6OM6|1|1|C|487
6OM6|1|1|G|488
6OM6|1|1|G|489
6OM6|1|1|C|490
6OM6|1|1|G|491
6OM6|1|1|A|492
6OM6|1|1|G|493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22