HL_6OM6_016

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

6OM6|1|1|U|546, 6OM6|1|1|A|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_016 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2584

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6OM6|1|1|C|544
6OM6|1|1|U|545
6OM6|1|1|U|546
6OM6|1|1|A|547
6OM6|1|1|G|548
6OM6|1|1|G|549

Current chains

Chain 1

23S ribosomal RNA

Nearby chains