HL_6OM6_036

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6OM6|1|1|A|1453, 6OM6|1|1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_036 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1638

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6OM6|1|1|C|1451
6OM6|1|1|G|1452
6OM6|1|1|A|1453
6OM6|1|1|C|1454
6OM6|1|1|G|1455
6OM6|1|1|G|1456
6OM6|1|1|U|1457
6OM6|1|1|U|1458
6OM6|1|1|G|1459

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17