HL_6OM6_051

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

6OM6|1|1|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_051 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3139

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6OM6|1|1|C|2143
6OM6|1|1|G|2144
6OM6|1|1|C|2145
6OM6|1|1|C|2146
6OM6|1|1|A|2147
6OM6|1|1|G|2148

Current chains

Chain 1

23S ribosomal RNA

Nearby chains