HL_6OM6_085

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_085 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0981

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6OM6|1|2|C|726
6OM6|1|2|G|727
6OM6|1|2|A|728
6OM6|1|2|A|729
6OM6|1|2|G|730
6OM6|1|2|G|731

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S15

Chain z

30S ribosomal protein S21