3D structure

PDB id
6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(5MU)(PSU)CGAGUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OM6_105 not in the Motif Atlas
Homologous match to HL_5E81_207
Geometric discrepancy: 0.2226
The information below is about HL_5E81_207
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

6OM6|1|5|G|53
6OM6|1|5|5MU|54
6OM6|1|5|PSU|55
6OM6|1|5|C|56
6OM6|1|5|G|57
6OM6|1|5|A|58
6OM6|1|5|G|59
6OM6|1|5|U|60
6OM6|1|5|C|61

Current chains

Chain 5
tRNA(gly)

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain E
50S ribosomal protein L5
Chain M
50S ribosomal protein L16

Coloring options:


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