HL_6OPE_054

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_054 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.1042

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6OPE|1|RA|C|487
6OPE|1|RA|G|488
6OPE|1|RA|G|489
6OPE|1|RA|G|491
6OPE|1|RA|A|492
6OPE|1|RA|G|493

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RY

50S ribosomal protein L24