HL_6OPE_068

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

6OPE|1|RA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_068 not in the Motif Atlas

Geometric match to HL_6N5P_004

Geometric discrepancy: 0.3915

The information below is about HL_6N5P_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6OPE|1|RA|G|1091
6OPE|1|RA|C|1092
6OPE|1|RA|G|1093
6OPE|1|RA|U|1094
6OPE|1|RA|A|1095
6OPE|1|RA|A|1096
6OPE|1|RA|U|1097
6OPE|1|RA|A|1098
6OPE|1|RA|G|1099
6OPE|1|RA|C|1100

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6