HL_6OPE_092

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6OPE|1|RA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_092 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.084

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OPE|1|RA|C|2248
6OPE|1|RA|U|2249
6OPE|1|RA|G|2250
6OPE|1|RA|G|2251
6OPE|1|RA|G|2252
6OPE|1|RA|G|2253
6OPE|1|RA|C|2254
6OPE|1|RA|G|2255
6OPE|1|RA|G|2256

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16