HL_6OPE_098

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6OPE|1|RA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_098 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1052

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6OPE|1|RA|C|2404
6OPE|1|RA|G|2405
6OPE|1|RA|U|2406
6OPE|1|RA|G|2407
6OPE|1|RA|U|2408
6OPE|1|RA|G|2409
6OPE|1|RA|G|2410
6OPE|1|RA|A|2411
6OPE|1|RA|A|2412
6OPE|1|RA|G|2413

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15