HL_6OPE_107

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6OPE|1|RA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_107 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0645

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6OPE|1|RA|G|2819
6OPE|1|RA|A|2820
6OPE|1|RA|A|2821
6OPE|1|RA|G|2822
6OPE|1|RA|A|2823
6OPE|1|RA|C|2824
6OPE|1|RA|C|2825
6OPE|1|RA|A|2826
6OPE|1|RA|C|2827

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17