HL_6OPE_118

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_118 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.089

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OPE|1|XA|C|320
6OPE|1|XA|A|321
6OPE|1|XA|C|322
6OPE|1|XA|U|323
6OPE|1|XA|G|324
6OPE|1|XA|A|325
6OPE|1|XA|G|326
6OPE|1|XA|A|327
6OPE|1|XA|C|328
6OPE|1|XA|A|329
6OPE|1|XA|C|330
6OPE|1|XA|G|331
6OPE|1|XA|G|332
6OPE|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20