HL_6OPE_122

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

6OPE|1|XA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_122 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.3256

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OPE|1|XA|C|458
6OPE|1|XA|G|464
6OPE|1|XA|A|465
6OPE|1|XA|C|466
6OPE|1|XA|G|467
6OPE|1|XA|A|468
6OPE|1|XA|G|474

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16