HL_6OPE_128

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

6OPE|1|XA|U|841, 6OPE|1|XA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_128 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.5029

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

6OPE|1|XA|G|838
6OPE|1|XA|U|841
6OPE|1|XA|C|842
6OPE|1|XA|U|843
6OPE|1|XA|C|848

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2