HL_6OPE_137

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_137 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.084

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

6OPE|1|XA|C|1165
6OPE|1|XA|G|1166
6OPE|1|XA|A|1167
6OPE|1|XA|A|1169
6OPE|1|XA|A|1170
6OPE|1|XA|G|1171

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2