3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGGAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OPE_142 not in the Motif Atlas
Homologous match to HL_6CZR_103
Geometric discrepancy: 0.0909
The information below is about HL_6CZR_103
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6OPE|1|XA|C|1515
6OPE|1|XA|G|1516
6OPE|1|XA|G|1517
6OPE|1|XA|A|1518
6OPE|1|XA|A|1519
6OPE|1|XA|G|1520

Current chains

Chain XA
16S rRNA

Nearby chains

Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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