HL_6OPE_185

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

6OPE|1|YA|A|1453, 6OPE|1|YA|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_185 not in the Motif Atlas

Homologous match to HL_7RQB_037

Geometric discrepancy: 0.0987

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6OPE|1|YA|C|1451
6OPE|1|YA|A|1453
6OPE|1|YA|U|1454
6OPE|1|YA|G|1455
6OPE|1|YA|G|1456
6OPE|1|YA|A|1457
6OPE|1|YA|C|1458
6OPE|1|YA|G|1459

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17