HL_6OPE_198

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6OPE|1|YA|G|1954, 6OPE|1|YA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_198 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1425

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6OPE|1|YA|G|1949
6OPE|1|YA|G|1950
6OPE|1|YA|U|1951
6OPE|1|YA|A|1952
6OPE|1|YA|A|1953
6OPE|1|YA|G|1954
6OPE|1|YA|U|1955
6OPE|1|YA|U|1956
6OPE|1|YA|C|1957

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YO

50S ribosomal protein L14