HL_6OPE_213

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_213 not in the Motif Atlas

Homologous match to HL_7RQB_064

Geometric discrepancy: 0.0991

The information below is about HL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6OPE|1|YA|C|2658
6OPE|1|YA|G|2659
6OPE|1|YA|A|2660
6OPE|1|YA|G|2661
6OPE|1|YA|A|2662
6OPE|1|YA|G|2663

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6