HL_6OPE_230

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAGCUGGGAGA

Length

12 nucleotides

Bulged bases

6OPE|1|XY|G|15, 6OPE|1|XY|C|16, 6OPE|1|XY|U|17, 6OPE|1|XY|G|18, 6OPE|1|XY|G|19, 6OPE|1|XY|G|20, 6OPE|1|XY|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_230 not in the Motif Atlas

Homologous match to HL_5IB8_207

Geometric discrepancy: 0.2664

The information below is about HL_5IB8_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OPE|1|XY|U|12
6OPE|1|XY|C|13
6OPE|1|XY|A|14
6OPE|1|XY|G|15
6OPE|1|XY|C|16
6OPE|1|XY|U|17
6OPE|1|XY|G|18
6OPE|1|XY|G|19
6OPE|1|XY|G|20
6OPE|1|XY|A|21
6OPE|1|XY|G|22
6OPE|1|XY|A|23

Current chains

Chain XY

A-site tRNAAla(GGC) U32-A38

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YZ

50S ribosomal protein L25