HL_6ORD_066

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

6ORD|1|RA|A|1067, 6ORD|1|RA|G|1068, 6ORD|1|RA|A|1070, 6ORD|1|RA|G|1071, 6ORD|1|RA|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_066 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2677

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ORD|1|RA|U|1065
6ORD|1|RA|U|1066
6ORD|1|RA|A|1067
6ORD|1|RA|G|1068
6ORD|1|RA|A|1069
6ORD|1|RA|A|1070
6ORD|1|RA|G|1071
6ORD|1|RA|C|1072
6ORD|1|RA|A|1073

Current chains

Chain RA

23S rRNA

Nearby chains