3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
6ORD|1|RA|U|1396, 6ORD|1|RA|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORD_072 not in the Motif Atlas
Homologous match to HL_7RQB_036
Geometric discrepancy: 0.0755
The information below is about HL_7RQB_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69023.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

6ORD|1|RA|G|1389
6ORD|1|RA|U|1390
6ORD|1|RA|U|1391
6ORD|1|RA|A|1392
6ORD|1|RA|A|1393
6ORD|1|RA|U|1394
6ORD|1|RA|A|1395
6ORD|1|RA|U|1396
6ORD|1|RA|U|1397
6ORD|1|RA|C|1398

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RX
50S ribosomal protein L23

Coloring options:


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