HL_6ORD_085
3D structure
- PDB id
- 6ORD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 6ORD|1|RA|A|1913, 6ORD|1|RA|C|1914, 6ORD|1|RA|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ORD_085 not in the Motif Atlas
- Homologous match to HL_7RQB_048
- Geometric discrepancy: 0.0861
- The information below is about HL_7RQB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ORD|1|RA|C|1909
6ORD|1|RA|G|1910
6ORD|1|RA|PSU|1911
6ORD|1|RA|A|1912
6ORD|1|RA|A|1913
6ORD|1|RA|C|1914
6ORD|1|RA|5MU|1915
6ORD|1|RA|A|1916
6ORD|1|RA|PSU|1917
6ORD|1|RA|A|1918
6ORD|1|RA|A|1919
6ORD|1|RA|OMC|1920
6ORD|1|RA|G|1921
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QV
- Transfer RNA; tRNA
- Chain QX
- mRNA
- Chain QY
- Transfer RNA; tRNA
Coloring options: