HL_6ORD_096

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6ORD|1|RA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_096 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0852

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6ORD|1|RA|C|2404
6ORD|1|RA|G|2405
6ORD|1|RA|U|2406
6ORD|1|RA|G|2407
6ORD|1|RA|U|2408
6ORD|1|RA|G|2409
6ORD|1|RA|G|2410
6ORD|1|RA|A|2411
6ORD|1|RA|A|2412
6ORD|1|RA|G|2413

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15