HL_6ORD_116

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_116 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0901

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ORD|1|XA|C|320
6ORD|1|XA|A|321
6ORD|1|XA|C|322
6ORD|1|XA|U|323
6ORD|1|XA|G|324
6ORD|1|XA|A|325
6ORD|1|XA|G|326
6ORD|1|XA|A|327
6ORD|1|XA|C|328
6ORD|1|XA|A|329
6ORD|1|XA|C|330
6ORD|1|XA|G|331
6ORD|1|XA|G|332
6ORD|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20