HL_6ORD_135

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_135 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.0876

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6ORD|1|XA|C|1165
6ORD|1|XA|G|1166
6ORD|1|XA|A|1168
6ORD|1|XA|A|1169
6ORD|1|XA|A|1170
6ORD|1|XA|G|1171

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2