HL_6ORD_229

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

6ORD|1|YA|U|2144, 6ORD|1|YA|C|2145, 6ORD|1|YA|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_229 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3351

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6ORD|1|YA|C|2142
6ORD|1|YA|C|2143
6ORD|1|YA|U|2144
6ORD|1|YA|C|2145
6ORD|1|YA|C|2146
6ORD|1|YA|G|2147
6ORD|1|YA|G|2148
6ORD|1|YA|G|2149

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain XK

30S ribosomal protein S11