3D structure

PDB id
6ORE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release complex 70S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6ORE|1|1|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORE_017 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0627
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6ORE|1|1|U|566
6ORE|1|1|U|567
6ORE|1|1|U|568
6ORE|1|1|U|569
6ORE|1|1|G|570
6ORE|1|1|U|571
6ORE|1|1|A|572
6ORE|1|1|U|573
6ORE|1|1|A|574
6ORE|1|1|A|575

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain b
50S ribosomal protein L32

Coloring options:


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