HL_6ORL_042

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6ORL|1|1|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_042 not in the Motif Atlas

Geometric match to HL_7EL1_002

Geometric discrepancy: 0.391

The information below is about HL_7EL1_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

6ORL|1|1|C|1727
6ORL|1|1|C|1728
6ORL|1|1|U|1729
6ORL|1|1|C|1730
6ORL|1|1|G|1731
6ORL|1|1|C|1732
6ORL|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains