HL_6ORL_059

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_059 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1569

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|A|2471
6ORL|1|1|G|2472
6ORL|1|1|U|2473
6ORL|1|1|U|2474
6ORL|1|1|C|2475
6ORL|1|1|A|2476
6ORL|1|1|U|2477
6ORL|1|1|A|2478
6ORL|1|1|U|2479

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain M

50S ribosomal protein L16

Chain f

50S ribosomal protein L36