HL_6ORL_065

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6ORL|1|1|G|2751, 6ORL|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1101

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|C|2745
6ORL|1|1|U|2746
6ORL|1|1|G|2747
6ORL|1|1|A|2748
6ORL|1|1|A|2749
6ORL|1|1|A|2750
6ORL|1|1|G|2751
6ORL|1|1|C|2752
6ORL|1|1|A|2753
6ORL|1|1|U|2754
6ORL|1|1|C|2755
6ORL|1|1|U|2756
6ORL|1|1|A|2757
6ORL|1|1|A|2758
6ORL|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36