HL_6OSI_047

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6OSI|1|RA|G|329, 6OSI|1|RA|A|330, 6OSI|1|RA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_047 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1522

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6OSI|1|RA|G|327
6OSI|1|RA|U|328
6OSI|1|RA|G|329
6OSI|1|RA|A|330
6OSI|1|RA|A|331
6OSI|1|RA|A|332
6OSI|1|RA|G|333
6OSI|1|RA|C|334
6OSI|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24