HL_6OSI_048

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6OSI|1|RA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_048 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1306

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OSI|1|RA|G|382
6OSI|1|RA|U|383
6OSI|1|RA|U|384
6OSI|1|RA|C|385
6OSI|1|RA|G|386
6OSI|1|RA|U|387
6OSI|1|RA|G|388
6OSI|1|RA|G|389
6OSI|1|RA|A|390
6OSI|1|RA|G|391
6OSI|1|RA|C|392

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15