HL_6OSI_092

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_092 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0936

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6OSI|1|RA|C|2324
6OSI|1|RA|G|2325
6OSI|1|RA|C|2326
6OSI|1|RA|A|2327
6OSI|1|RA|A|2328
6OSI|1|RA|G|2329
6OSI|1|RA|G|2330
6OSI|1|RA|G|2331

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RG

50S ribosomal protein L5

Chain RQ

50S ribosomal protein L16